Index

A

add_edge() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) add_node() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) add_port_hint() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) add_port_metadata() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method)

AddEdge (class in pyiron_workflow.actions) AddInput (class in pyiron_workflow.actions) AddNode (class in pyiron_workflow.actions) AddOutput (class in pyiron_workflow.actions) args (pyiron_workflow.execution.ExecutorInstructions attribute) Atomic (class in pyiron_workflow.atomic_node) atomictype2node() (in module pyiron_workflow.constructors)

B

blocking (pyiron_workflow.execution.ProgressHook attribute)

C

cache_directory (pyiron_workflow.executorlib.CacheOverride attribute) CacheOverride (class in pyiron_workflow.executorlib) check_co_ownership() (in module pyiron_workflow.lexical) coerce_to_port() (in module pyiron_workflow.datatypes) CombinedValidationReport (class in pyiron_workflow.validation) complete (pyiron_workflow.validation.NotParseable attribute) (pyiron_workflow.validation.TypeValidationReport property) connect() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) Constant (class in pyiron_workflow.constant)

constructor (pyiron_workflow.execution.ExecutorInstructions attribute) copy() (pyiron_workflow.datatypes.Node method) (pyiron_workflow.datatypes.StaticGraph method) (pyiron_workflow.datatypes.StaticNode method) (pyiron_workflow.workflow_node.Workflow method) create_input() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) create_input_for() (pyiron_workflow.workflow_node.Workflow method) create_output() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) create_output_from() (pyiron_workflow.workflow_node.Workflow method)

D

dag_layers_fail_fast (pyiron_workflow.execution.RunConfig attribute) dag_layers_max_threads (pyiron_workflow.execution.RunConfig attribute) dag_layers_multithreaded (pyiron_workflow.execution.RunConfig attribute) DedicatedExecutorError

depth (pyiron_workflow.validation.TypeValidationReport attribute) disconnect() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) duration (pyiron_workflow.execution.Run property)

E

edge (pyiron_workflow.actions.AddEdge attribute) (pyiron_workflow.actions.RemoveEdge attribute) edgelist2edges() (in module pyiron_workflow.constructors) edges (pyiron_workflow.datatypes.Graph property) (pyiron_workflow.datatypes.StaticGraph property) (pyiron_workflow.workflow_node.Workflow property) edges2edgelist() (in module pyiron_workflow.constructors) EdgeTuple (class in pyiron_workflow.datatypes) emit_exception() (pyiron_workflow.execution.RunConfig method) emit_progress() (pyiron_workflow.execution.RunConfig method) evaluate() (pyiron_workflow.atomic_node.Atomic method) (pyiron_workflow.constant.Constant method) (pyiron_workflow.dag.Macro method) (pyiron_workflow.datatypes.Node method) (pyiron_workflow.flowcontrollers.forflow.ForEach method) (pyiron_workflow.flowcontrollers.ifflow.If method) (pyiron_workflow.flowcontrollers.tryflow.Try method) (pyiron_workflow.flowcontrollers.whileflow.While method) (pyiron_workflow.workflow_node.Workflow method)

evaluate_dag_by_layer() (in module pyiron_workflow.dag) evaluate_node() (in module pyiron_workflow.dag) exception (pyiron_workflow.execution.Run attribute) exception_hooks (pyiron_workflow.execution.RunConfig attribute) executor (pyiron_workflow.datatypes.Node attribute) ExecutorInstructions (class in pyiron_workflow.execution)

F

FAILED (pyiron_workflow.execution.RunStatus attribute) FINISHED (pyiron_workflow.execution.RunStatus attribute) finished_at (pyiron_workflow.execution.Run attribute) flatten() (pyiron_workflow.workflow_node.Workflow method) fleche_cache (pyiron_workflow.execution.RunConfig attribute) fn (pyiron_workflow.execution.ProgressHook attribute)

ForEach (class in pyiron_workflow.flowcontrollers.forflow) from_graph (pyiron_workflow.actions.MoveNode attribute) from_recipe() (pyiron_workflow.workflow_node.Workflow class method) from_value() (pyiron_workflow.constant.Constant class method) function_metadata (pyiron_workflow.atomic_node.Atomic property) (pyiron_workflow.dag.Macro property)

G

gather_target_inputs() (in module pyiron_workflow.dag) generate_flowrep_live_node() (pyiron_workflow.datatypes.Node method) (pyiron_workflow.datatypes.StaticNode method) (pyiron_workflow.workflow_node.Workflow method) get_input() (pyiron_workflow.datatypes.Node method) get_item_from_map() (in module pyiron_workflow.lexical) get_label() (in module pyiron_workflow.lexical) get_node() (pyiron_workflow.datatypes.Graph method)

get_output() (pyiron_workflow.datatypes.Node method) Graph (class in pyiron_workflow.datatypes) graph (pyiron_workflow.datatypes.InjectionContextHelper property) (pyiron_workflow.injection.InjectionContext property) (pyiron_workflow.validation.SemantikonValidationReport attribute) GraphAction (class in pyiron_workflow.actions) group() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method)

H

has_default (pyiron_workflow.datatypes.InputPort attribute)

HasLexicalPath (class in pyiron_workflow.lexical) hooks_max_threads (pyiron_workflow.execution.RunConfig attribute)

I

If (class in pyiron_workflow.flowcontrollers.ifflow) ImmutableDag (class in pyiron_workflow.datatypes) InjectionContext (class in pyiron_workflow.injection) InjectionContextHelper (class in pyiron_workflow.datatypes) input_label (pyiron_workflow.transformers.Transform1toN attribute) input_label() (pyiron_workflow.transformers.TransformNto1 static method) InputPort (class in pyiron_workflow.datatypes) inputs (pyiron_workflow.datatypes.Node property) (pyiron_workflow.datatypes.StaticNode property) (pyiron_workflow.workflow_node.Workflow property) inputs_to_list() (pyiron_workflow.transformers.TransformNto1 static method) instantiate() (pyiron_workflow.execution.ExecutorInstructions method) invalid_edges (pyiron_workflow.validation.TypeValidationReport attribute) inverse() (pyiron_workflow.actions.AddEdge method) (pyiron_workflow.actions.AddInput method) (pyiron_workflow.actions.AddNode method) (pyiron_workflow.actions.AddOutput method) (pyiron_workflow.actions.GraphAction method) (pyiron_workflow.actions.MoveNode method) (pyiron_workflow.actions.RemoveEdge method) (pyiron_workflow.actions.RemoveInput method) (pyiron_workflow.actions.RemoveNode method) (pyiron_workflow.actions.RemoveOutput method) (pyiron_workflow.actions.RenameNode method) (pyiron_workflow.actions.ReplacePort method)

is_nodelike() (in module pyiron_workflow.workflow_node) is_prime_mover() (pyiron_workflow.execution.RunConfig method) iterable_to_outputs() (pyiron_workflow.transformers.Transform1toN static method)

K

kwargs (pyiron_workflow.execution.ExecutorInstructions attribute)

L

label (pyiron_workflow.datatypes.InjectionContextHelper property) (pyiron_workflow.datatypes.Node property) (pyiron_workflow.datatypes.Port attribute) (pyiron_workflow.execution.Run property) (pyiron_workflow.execution.Step attribute) (pyiron_workflow.injection.InjectionContext property) (pyiron_workflow.lexical.Lexical property) (pyiron_workflow.lexical.LexicalPath property) labels (pyiron_workflow.execution.Steps property) last_run (pyiron_workflow.datatypes.Node attribute) Lexical (class in pyiron_workflow.lexical) lexical_path (pyiron_workflow.datatypes.Node property) (pyiron_workflow.datatypes.Port property) (pyiron_workflow.execution.Run attribute) (pyiron_workflow.injection.InjectionContext property) (pyiron_workflow.lexical.HasLexicalPath property) (pyiron_workflow.lexical.Lexical property)

lexical_path() (in module pyiron_workflow.lexical) lexical_root (pyiron_workflow.datatypes.Node property) LexicalMap (class in pyiron_workflow.lexical) LexicalPath (class in pyiron_workflow.lexical) lock_subgraph() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) logger_name (pyiron_workflow.execution.RunConfig attribute)

M

Macro (class in pyiron_workflow.dag) macro2workflow() (in module pyiron_workflow.constructors) metadata (pyiron_workflow.validation.CombinedValidationReport attribute) module pyiron_workflow pyiron_workflow.actions pyiron_workflow.api pyiron_workflow.api.schemas pyiron_workflow.api.tools pyiron_workflow.atomic_node pyiron_workflow.constant pyiron_workflow.constructors pyiron_workflow.dag pyiron_workflow.datatypes pyiron_workflow.execution pyiron_workflow.executorlib pyiron_workflow.flowcontrollers pyiron_workflow.flowcontrollers.forflow pyiron_workflow.flowcontrollers.ifflow pyiron_workflow.flowcontrollers.tryflow pyiron_workflow.flowcontrollers.whileflow pyiron_workflow.injection pyiron_workflow.lexical pyiron_workflow.pull pyiron_workflow.transformers pyiron_workflow.type_hinting pyiron_workflow.validation pyiron_workflow.workflow_node

MoveNode (class in pyiron_workflow.actions) MutableDag (class in pyiron_workflow.datatypes) MutableNodeMap (class in pyiron_workflow.workflow_node) MutablePortMap (class in pyiron_workflow.workflow_node)

N

name (pyiron_workflow.validation.TypeValidationReport attribute) new_label (pyiron_workflow.actions.MoveNode attribute) (pyiron_workflow.actions.RenameNode attribute) new_port (pyiron_workflow.actions.ReplacePort attribute) Node (class in pyiron_workflow.datatypes) node (pyiron_workflow.actions.AddNode attribute) (pyiron_workflow.actions.MoveNode attribute) (pyiron_workflow.actions.RemoveNode attribute) (pyiron_workflow.actions.RenameNode attribute)

node() (in module pyiron_workflow.constructors) (pyiron_workflow.transformers.Transform1toN method) (pyiron_workflow.transformers.TransformNto1 method) NodeMap (class in pyiron_workflow.datatypes) nodes (pyiron_workflow.datatypes.Graph property) (pyiron_workflow.datatypes.StaticGraph property) (pyiron_workflow.workflow_node.Workflow property) NodeSingleExecutor (class in pyiron_workflow.executorlib) NodeSlurmExecutor (class in pyiron_workflow.executorlib) NotParseable (class in pyiron_workflow.validation)

O

old_label (pyiron_workflow.actions.MoveNode attribute) (pyiron_workflow.actions.RenameNode attribute) old_port (pyiron_workflow.actions.ReplacePort attribute) OperatorInjectionMixin (class in pyiron_workflow.injection) output_label (pyiron_workflow.transformers.TransformNto1 attribute) output_label() (pyiron_workflow.transformers.Transform1toN static method) OutputPort (class in pyiron_workflow.datatypes)

outputs (pyiron_workflow.datatypes.Node property) (pyiron_workflow.datatypes.StaticNode property) (pyiron_workflow.execution.Run property) (pyiron_workflow.workflow_node.Workflow property) owner (pyiron_workflow.datatypes.Node property) (pyiron_workflow.datatypes.Port attribute) (pyiron_workflow.lexical.Lexical property)

P

parent (pyiron_workflow.lexical.LexicalPath property) PENDING (pyiron_workflow.execution.RunStatus attribute) populate_input_ports() (in module pyiron_workflow.execution) populate_outputs() (in module pyiron_workflow.dag) Port (class in pyiron_workflow.datatypes) port (pyiron_workflow.actions.AddInput attribute) (pyiron_workflow.actions.AddOutput attribute) (pyiron_workflow.actions.RemoveInput attribute) (pyiron_workflow.actions.RemoveOutput attribute) (pyiron_workflow.datatypes.InjectionContextHelper property) (pyiron_workflow.injection.InjectionContext property) PortMap (class in pyiron_workflow.datatypes) prime_mover (pyiron_workflow.execution.RunConfig property) progress_hooks (pyiron_workflow.execution.RunConfig attribute) ProgressHook (class in pyiron_workflow.execution) ProtectedResourceError pull() (in module pyiron_workflow.pull) (pyiron_workflow.datatypes.Node method) pulled_inputs() (in module pyiron_workflow.pull) (pyiron_workflow.datatypes.Node method) pulled_workflow() (in module pyiron_workflow.pull) (pyiron_workflow.datatypes.Node method) pyiron_workflow module pyiron_workflow.actions module pyiron_workflow.api module pyiron_workflow.api.schemas module pyiron_workflow.api.tools module pyiron_workflow.atomic_node module pyiron_workflow.constant module

pyiron_workflow.constructors module pyiron_workflow.dag module pyiron_workflow.datatypes module pyiron_workflow.execution module pyiron_workflow.executorlib module pyiron_workflow.flowcontrollers module pyiron_workflow.flowcontrollers.forflow module pyiron_workflow.flowcontrollers.ifflow module pyiron_workflow.flowcontrollers.tryflow module pyiron_workflow.flowcontrollers.whileflow module pyiron_workflow.injection module pyiron_workflow.lexical module pyiron_workflow.pull module pyiron_workflow.transformers module pyiron_workflow.type_hinting module pyiron_workflow.validation module pyiron_workflow.workflow_node module

R

recipe (pyiron_workflow.datatypes.Node property) (pyiron_workflow.datatypes.StaticNode property) (pyiron_workflow.transformers.Transform1toN property) (pyiron_workflow.transformers.TransformNto1 property) (pyiron_workflow.workflow_node.Workflow property) recipe2node() (in module pyiron_workflow.constructors) redo() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) redo_stack (pyiron_workflow.workflow_node.Workflow attribute) remove_edge() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) remove_input() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) remove_node() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) remove_output() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) remove_port_hint() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) remove_port_metadata() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method)

RemoveEdge (class in pyiron_workflow.actions) RemoveInput (class in pyiron_workflow.actions) RemoveNode (class in pyiron_workflow.actions) RemoveOutput (class in pyiron_workflow.actions) rename_input() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) rename_node() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) rename_output() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) RenameNode (class in pyiron_workflow.actions) ReplacePort (class in pyiron_workflow.actions) result (pyiron_workflow.execution.Run attribute) Run (class in pyiron_workflow.execution) run (pyiron_workflow.execution.Step attribute) run() (in module pyiron_workflow.execution) (pyiron_workflow.datatypes.Node method) run_dir (pyiron_workflow.execution.Run attribute) (pyiron_workflow.execution.RunConfig attribute) RunConfig (class in pyiron_workflow.execution) RUNNING (pyiron_workflow.execution.RunStatus attribute) RunStatus (class in pyiron_workflow.execution)

S

segments (pyiron_workflow.lexical.LexicalPath property) SemantikonValidationReport (class in pyiron_workflow.validation) source (pyiron_workflow.datatypes.EdgeTuple attribute) source_port_to_handle() (in module pyiron_workflow.datatypes) start_method (pyiron_workflow.execution.ExecutorInstructions attribute) started_at (pyiron_workflow.execution.Run attribute) StaticGraph (class in pyiron_workflow.datatypes)

StaticNode (class in pyiron_workflow.datatypes) status (pyiron_workflow.execution.Run attribute) Step (class in pyiron_workflow.execution) Steps (class in pyiron_workflow.execution) steps (pyiron_workflow.execution.Run attribute) submit() (pyiron_workflow.executorlib.CacheOverride method) subreports (pyiron_workflow.validation.TypeValidationReport attribute)

T

target (pyiron_workflow.datatypes.EdgeTuple attribute) target_port_to_handle() (in module pyiron_workflow.datatypes) text (pyiron_workflow.validation.SemantikonValidationReport attribute) (pyiron_workflow.validation.TypeValidationReport property) to_graph (pyiron_workflow.actions.MoveNode attribute) topo_sort_nodes() (in module pyiron_workflow.dag) Transform1toN (class in pyiron_workflow.transformers)

TransformNto1 (class in pyiron_workflow.transformers) Try (class in pyiron_workflow.flowcontrollers.tryflow) type_hint (pyiron_workflow.datatypes.Port attribute) type_hint_is_as_or_more_specific_than() (in module pyiron_workflow.type_hinting) type_hint_to_tuple() (in module pyiron_workflow.type_hinting) type_metadata (pyiron_workflow.datatypes.Port attribute) types (pyiron_workflow.validation.CombinedValidationReport attribute) TypeValidationReport (class in pyiron_workflow.validation)

U

undo() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) undo_limit (pyiron_workflow.datatypes.MutableDag attribute) (pyiron_workflow.workflow_node.Workflow property) undo_stack (pyiron_workflow.workflow_node.Workflow attribute)

unfulfilled_edges (pyiron_workflow.validation.TypeValidationReport attribute) ungroup() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) unlock_subgraph() (pyiron_workflow.datatypes.MutableDag method) (pyiron_workflow.workflow_node.Workflow method) UnmatchedExceptionError

V

valid (pyiron_workflow.validation.CombinedValidationReport property) (pyiron_workflow.validation.NotParseable attribute) (pyiron_workflow.validation.SemantikonValidationReport attribute) (pyiron_workflow.validation.TypeValidationReport property) valid_value() (in module pyiron_workflow.type_hinting) validate() (pyiron_workflow.dag.Macro method) (pyiron_workflow.workflow_node.Workflow method)

validate_constant_edge() (in module pyiron_workflow.validation) validate_edge() (in module pyiron_workflow.validation) validate_ontology() (in module pyiron_workflow.validation) validate_plan() (in module pyiron_workflow.validation) validate_types() (in module pyiron_workflow.validation)

W

While (class in pyiron_workflow.flowcontrollers.whileflow)

Workflow (class in pyiron_workflow.workflow_node) workflow2macro() (in module pyiron_workflow.constructors)